PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000157.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 300aa    MW: 33538.2 Da    PI: 8.4706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000157.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.4e-33571971128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+P+d+e++ e+L++k  +++      ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r++
  Itr_sc000157.1_g00002.1  57 LPAGVKFDPSDQEIL-EHLQAKSVSDSrklhplIDEFIPtIEGEnGICYTHPEKLP-GVNKDGQVRHFFHRPSKAYTTGTRKRRKV 140
                              799************.677777555553776553333333665557**********.667777888******************74 PP

                      NAM  79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +      + +W++tgk+++v+  + +l g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Itr_sc000157.1_g00002.1 141 HtdadggETRWHKTGKTRAVFG-EANLRGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 197
                              4456555778************.999***********66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-3752216IPR003441NAC domain
PROSITE profilePS5100533.71257216IPR003441NAC domain
PfamPF023652.3E-1458197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTWCNNSAAG DQPPLQIIHS DDDNAAVKTS RIRSVTCPSC GHSIQLESQG IHDLPGLPAG  60
VKFDPSDQEI LEHLQAKSVS DSRKLHPLID EFIPTIEGEN GICYTHPEKL PGVNKDGQVR  120
HFFHRPSKAY TTGTRKRRKV HTDADGGETR WHKTGKTRAV FGEANLRGYK KILVLYTNYG  180
RQRKPEKTNW VMHQYHLGHD EEEKDGELVV SKVFYQTQPR QCGSSSSSSS KQPLNKTSSV  240
SFSGRDNNNF VDYYNPPFIS SYHVGSQNPD AQPHQLIPSL VVHADTSSFI NLSSNSSKDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016491525.11e-150PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-119NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A059SWK21e-147A0A059SWK2_HEVBR; NAC transcription factor
STRINGSolyc02g077610.2.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73